Hacking is believing in English

Bioinformatics, Gene expression analysis.

Thursday, July 05, 2007

Correspondence between exon and standard array

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I found the short technical report about Correspondence between exon and standard array. Researchers described the performance of Affymetrix...
27 comments:
Saturday, June 23, 2007

Recommend Books for micarray analysis

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Bioinformatics and Computational Biology Solutions Using R and Bioconductor (Statistics for Biology and Health)
6 comments:

Mapping Agilent Microarray ID to Affymetrix GeneChip using ActiveRecord

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First, I make ActiveRecord model script (ensembl.rb) for Agilentprobe table in EnsemblMart. #!/usr/bin/env ruby require 'rubygems' r...

Modeling Ensembl Mart using ActiveRecord

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First, I make a Ruby script for modeling ensembl mart. #!/usr/bin/env ruby require 'rubygems' require_gem 'activerecord' Act...
1 comment:

Free clustring software for gene expression data

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Cluster 3.0 + Java TreeView TM4 dChip Expression Profiler GenePattern (Maybe freesoft) R + BioConductor

One-liner for mapping Agilent Microarray ID to Affymetrix Genechip ID

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echo " SELECT mmusculus_gene_ensembl__xref_agilentprobe__dm.dbprimary_id, mmusculus_gene_ensembl__xref_agilentprobe__dm.gene_stable_id,...
3 comments:
Sunday, June 03, 2007

One-liner for mapping Affymetrix Probe ID to NCBI Entrez Gene ID :-)

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You can map Affymetrix IDs to NCBI Entrez Genes by one-liner command. echo 'library(mouse4302)\ nwrite .table( unlist (as.list(mouse4...

Making a gene expression database within 11 min using Ruby on Rails

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Ruby on Rails is very powerful web application framework. This site shows that bioinformatics scientist can make a simple viewer for gene ex...
Saturday, June 02, 2007

We need big memory for exon array analysis

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In addition, the oligo package will require you to make a PDEnv with the HuEx-l_OST-V2.cdf file, which I am unable to do on a 64 bit Linux b...
7 comments:

You must read documents if you analysis of exon array

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Quality assessment White Paper,Quality Assessment of Exon Arrays (pdf, 85 KB) Whitepaper, Quality Assessment of Exon and Gene Array Backgrou...

Useful websites for Exon Array analysis

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GeneChip All exon array official information Affymetrix - GeneChip® Exon Array System Mouse exon array offical information Affymetrix - Tech...
2 comments:
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