You must read documents if you analysis of exon array

Quality assessment

• White Paper,Quality Assessment of Exon Arrays (pdf, 85 KB)
• Whitepaper, Quality Assessment of Exon and Gene Array

Background correction

• Exon Array Background Correction v1.0 (pdf, 78 KB)

Gene-level expression

• Gene Level Summarization on Exon Arrays (pdf, 747 KB)
• Gene Signal Estimates from Exon Arrays v1.0 (pdf, 428 KB)

Alternative splicing anaysis

• Alternative Transcript Analysis Methods for Exon Arrays v1.1 (pdf, 79 KB)
• Exon Probeset Annotations and Transcript Cluster Groupings v1.0 (pdf, 87 KB)